rs29645031 SNP Detail

Summary

• ID
  rs29645031
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:124193536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACACTTTTCC ACAAAGATTT CTGAACCCCG AGTGCTGCTT TTGTTTTATA TAAACTGGTA
  GAAAGAAGAT TGTCCTGAAG ACAAACCTTA CTTATGTCAT CAGTATGGAA AATTTGTGCT
  GGTCCCCAGC TAGAAGCTTT ACCTCTAATG TCTAGAATTC AAGTTGCTAG AAGGTACCCT
  ACATGGTACC AGAAGAAAGG CTAAAGGGAA TACAGATTAA TGTATCTTCT TACAAAATTG
  TCCCTCATCC AAGCCAAAAA GAAATGTGAA GAGGTGGTAG GAAAGATCTT GAGAGTCAAA
  R
  GATGAGGAAG TTGGCTGGAA ACACAAATAT TCTAGAAAGG GAATGGGTAG ACCAAAATGT
  CTTATGAATA TGACTCCAAA AATACAATCA GAGGAAGGAT CACTATACTA TGCATGCTAG
  TATGGAAGGA AGAAAGGTCA CAAAGCTTCT AGCCCTCACA GTCATTTACA GGAAACTTTA
  AATATGGGAA TGGGACAGGT TGGCATTGCA AGAGAAAGGA ACAAAGATTA GCCATGTAGT
  ACCAAGTAAT CAGACACCAG AACATAAAAG TATGCAATTT TACATGGTCT CTACAGTTTA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46325875	mCV24426979	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29645031					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:124193536 () rs orientation: forward

Symbol	Name	Function Class
4930526I15Rik	RIKEN cDNA 4930526I15 gene	1589 bp downstream
Gm20783	predicted gene, 20783	1015 bp downstream
Ppp2r3d	protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta	1876 bp upstream
Rr689518	regulatory region 689518	within coordinates
Rr689519	regulatory region 689519	1386 bp proximal
Tssr3102	transcription start site region 3102	1992 bp upstream
Tssr3103	transcription start site region 3103	1950 bp upstream
Tssr3104	transcription start site region 3104	1858 bp upstream
Tssr3105	transcription start site region 3105	1748 bp upstream