rs29645884 SNP Detail

Summary

• ID
  rs29645884
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:19937243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTGGAAAT GGTATGATTA
  AAACACTAAG TCTGTCTTCC TGAGTTATTC TACTACAGCC AGGGGAGCCT CAGCAGGGCC
  AAAAGCCTCA ATTGAGGCAA CACAAACTAC AGCATACCCA GAAGGAAATT TCTCTTTGAT
  GGCGCTCAGG CCAGTTCATT GGAATATGAC TGAATCTTTA AAGAAGCAAA TCCATTAAAT
  Y
  TTTAGAGAAG TAAAAGCCAA TTTGTGATTT CATTGAATGT TAAAAAATGA CCTCACAATT
  CCGTTTATTA AGACCAATTC TTAAAATCGA AACAAAGACG TATAGAAACC TTTTTAACTT
  TTGTTTAAAA CTTTAGGTGT TCTGTCTTTT ATTAATAATT TGTTTTCTGT TATACAAGCA
  AGATTTCTTT TTTTATTAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss46866503	NES10963709	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs29645884					SNP	C	C	C	C	T	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46866503	NES10963709	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:19937243 () rs orientation: forward

Symbol	Name	Function Class
Chst7	carbohydrate sulfotransferase 7	within coordinates
Rr9642	regulatory region 9642	1443 bp distal