rs29645887 SNP Detail

Summary

• ID
  rs29645887
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:19937292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACTACAGC CAGGGGAGCC
  TCAGCAGGGC CAAAAGCCTC AATTGAGGCA ACACAAACTA CAGCATACCC AGAAGGAAAT
  TTCTCTTTGA TGGCGCTCAG GCCAGTTCAT TGGAATATGA CTGAATCTTT AAAGAAGCAA
  ATCCATTAAA TCTTTAGAGA AGTAAAAGCC AATTTGTGAT TTCATTGAAT GTTAAAAAAT
  R
  ACCTCACAAT TCCGTTTATT AAGACCAATT CTTAAAATCG AAACAAAGAC GTATAGAAAC
  CTTTTTAACT TTTGTTTAAA ACTTTAGGTG TTCTGTCTTT TATTAATAAT TTGTTTTCTG
  TTATACAAGC AAGATTTCTT TTTTTATTAG GTATTTTCTT ATTTTACATT TCCAATGCTA
  TCCCAAAAGT CCCCCATACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46866506	NES10963710	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29645887					SNP	G	G	G	G	G	A	G	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46866506	NES10963710	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:19937292 () rs orientation: forward

Symbol	Name	Function Class
Chst7	carbohydrate sulfotransferase 7	within coordinates
Rr9642	regulatory region 9642	1492 bp distal