rs29646195 SNP Detail

Summary

• ID
  rs29646195
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:19925642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAGTGTC ATTCTCCAGG
  TGGGGAATCA TGTCCAGTCA CTGGATGCCT TCTGTACACA TTGTGACTCT CCCTTGCCTG
  AAGTTGGTTG GTTAGCAAAC TTAAATTCGT TTTGAAGGAG TTAGGGAAAG GTGGAGTACA
  CTCAGTGCAC CCCAGAGGGT GTCCCTGCCC TGTGGCAGCC CTGTCCAGCT CTAGCCCGGC
  R
  TTGAGCAAAC CCAGGAGCAG AGCGTAAGTG GGCGGGGAGA AGTTTCGGGT ACCATGGGCA
  GGGCCTGCAG CTGCTGAACC GGCCAATGAG CGCTCTCAAG AGGCTGAGCC AAGAAGGAGG
  CTGAGTGTGC CGCCACCACT GCCTCCCAAG TTTCCTGTAG TGGATACACC GCCCGGCTGC
  TCCACTCCGC TCCACCCAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46866404	NES10963933	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29646195					SNP	G	G	G	G	G	G	A	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46866404	NES10963933	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:19925642 () rs orientation: forward

Symbol	Name	Function Class
Chst7	carbohydrate sulfotransferase 7	157 bp upstream
Cpgi22642	CpG island 22642	28 bp proximal
Rr690370	regulatory region 690370	within coordinates
Rr690371	regulatory region 690371	223 bp distal
Tssr160634	transcription start site region 160634	132 bp upstream
Tssr160635	transcription start site region 160635	178 bp upstream