rs29646198 SNP Detail

Summary

• ID
  rs29646198
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:19925731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTAGCAAA CTTAAATTCG
  TTTTGAAGGA GTTAGGGAAA GGTGGAGTAC ACTCAGTGCA CCCCAGAGGG TGTCCCTGCC
  CTGTGGCAGC CCTGTCCAGC TCTAGCCCGG CGTTGAGCAA ACCCAGGAGC AGAGCGTAAG
  TGGGCGGGGA GAAGTTTCGG GTACCATGGG CAGGGCCTGC AGCTGCTGAA CCGGCCAATG
  R
  GCGCTCTCAA GAGGCTGAGC CAAGAAGGAG GCTGAGTGTG CCGCCACCAC TGCCTCCCAA
  GTTTCCTGTA GTGGATACAC CGCCCGGCTG CTCCACTCCG CTCCACCCAA CATTGAGGGA
  GACCCGAAGA GGCCGGAGCC GAGGACTTTG GGCTGGGTTT TCTGGACAGA ACCAGCAGGC
  GCCTACTCTG CTCTGGGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46866407	NES10963934	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29646198					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46866407	NES10963934	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:19925731 () rs orientation: forward

Symbol	Name	Function Class
Chst7	carbohydrate sulfotransferase 7	68 bp upstream
Cpgi22642	CpG island 22642	within coordinates
Rr690370	regulatory region 690370	within coordinates
Rr690371	regulatory region 690371	312 bp distal
Tssr160634	transcription start site region 160634	43 bp upstream
Tssr160635	transcription start site region 160635	89 bp upstream