rs29646250 SNP Detail

Summary

• ID
  rs29646250
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:20414623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGCACCCG TAGGGAGAAG
  GGTGAGCCCT CAGGATCGCT AGTCTCTGCC AGTCCCCGGG CCCGCGGCTA CCTATCTGCC
  TCGCCTCCGT GTCCCTGGGG AGTTTTTTCC CTTCCCAAGG TTCTCTGCCT AGCCTTTGAA
  TCCACTGCAC TGTCACTAGC CCTGTGAATA ACCGGGACAG GACCGTCTTG GTGGGTAAGA
  Y
  GAAGAAGCTA GATTTGGGCG AAGGCCCCTG GGAAGCTAGA TTTGTTCACC CCAATCCGGC
  GCTGAGACTG CTCTGTGAGT AGCCAGTGAG CCCCGTGGCA GGAGCAAGGC AGCGGGAGTT
  TAGCTTCCCA GAGTTCGGCC ATTGTTGTCA CTGTCCCCTG CCCCTGGAGG CTGCAGCAGT
  GTTACCCTTT TGGTACAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46868228	NES10974984	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29646250					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46868228	NES10974984	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:20414623 () rs orientation: forward

Symbol	Name	Function Class
Rgn	regucalcin	1403 bp upstream
Rr690400	regulatory region 690400	within coordinates
Tssr160644	transcription start site region 160644	642 bp downstream
Tssr160645	transcription start site region 160645	149 bp downstream
Tssr160646	transcription start site region 160646	1322 bp upstream
Tssr160647	transcription start site region 160647	1396 bp upstream