rs29646253 SNP Detail

Summary

• ID
  rs29646253
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:20414645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCCCTCA GGATCGCTAG
  TCTCTGCCAG TCCCCGGGCC CGCGGCTACC TATCTGCCTC GCCTCCGTGT CCCTGGGGAG
  TTTTTTCCCT TCCCAAGGTT CTCTGCCTAG CCTTTGAATC CACTGCACTG TCACTAGCCC
  TGTGAATAAC CGGGACAGGA CCGTCTTGGT GGGTAAGATG AAGAAGCTAG ATTTGGGCGA
  M
  GGCCCCTGGG AAGCTAGATT TGTTCACCCC AATCCGGCGC TGAGACTGCT CTGTGAGTAG
  CCAGTGAGCC CCGTGGCAGG AGCAAGGCAG CGGGAGTTTA GCTTCCCAGA GTTCGGCCAT
  TGTTGTCACT GTCCCCTGCC CCTGGAGGCT GCAGCAGTGT TACCCTTTTG GTACAGGTAC
  TTCACTTGCA GCGCGGACCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ
ss46868231	NES10974985	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ
rs29646253					SNP	A	A	A	A	A	A	C	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46868231	NES10974985	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:20414645 () rs orientation: forward

Symbol	Name	Function Class
Rgn	regucalcin	1381 bp upstream
Rr690400	regulatory region 690400	within coordinates
Tssr160644	transcription start site region 160644	664 bp downstream
Tssr160645	transcription start site region 160645	171 bp downstream
Tssr160646	transcription start site region 160646	1300 bp upstream
Tssr160647	transcription start site region 160647	1374 bp upstream