rs29646425 SNP Detail

Summary

• ID
  rs29646425
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:20157286 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAAACATC AGAAGTGGGC
  ACCAACCTGC GATGACCACC ATGAGCAACC CAAGTCAAGA TTTACATTCA GCCCTCTTTC
  TCACGCTCTG TGGCCTGTCC CCTGGGGTGG CACAGCTCCC TGGGAAATCC CCCAATACCT
  TTTGCAGATC TAAACTGGGG CGGGGAGTGG GGAATCAATG CTGATGGAGA GCAGCACAAC
  S
  GAGATAAAAT GAAGCAAAGG GATCAAGGAG CCACCTCTGT ATCTTTCATC TTAGTTCCTA
  GTAAAGAAAC GTCGAAACGG GAACACCCCC CCCCCCACAC ACACACACAC ACACACACAC
  ACAAAATGCT TTTTAACCGT TGCAGAAAGC CAGAAAAATG CAGACAGTTG ACCTTGGAAA
  CCCACAGCGT CTCAGCGGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	KK/HlJ	NZW/LacJ
ss46867373	NES10960156	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	KK/HlJ	NZW/LacJ
rs29646425					SNP	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46867373	NES10960156	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:20157286 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22643	CpG island 22643	239 bp proximal
Rr690377	regulatory region 690377	453 bp distal
Rr690378	regulatory region 690378	713 bp proximal
Slc9a7	solute carrier family 9 (sodium/hydrogen exchanger), member 7	within coordinates
Tssr163067	transcription start site region 163067	681 bp downstream
Tssr163068	transcription start site region 163068	729 bp downstream