rs29646499 SNP Detail

Summary

• ID
  rs29646499
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96318970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGAAACCT TGGGTTAGAA
  AACAAAAACA AACAAACCAA AACCACAAAT AAACGAATGG GCCTGTCGTC TGTGCAGTCC
  TTGGGCTCTT GGTATAGTGG ACACAAGACC CATTCCGACT GATTTTTCAG GACTGAATTA
  CATATTGGTC CTAAAGGGCA GATGAGGAAT TTGAAGGGCC CTCCGGGAGG TATTTCCCTG
  R
  GGAGACTGGA GACAGAGGTG CATGCCAAAC ACCCACATTC CATCAGTCTC CAGCTGAAAA
  AATTAATTGC CTGCCCTTTA TGCCATTTGT CTTCGGCATG TGAACTGCAG TCTCAGAGTG
  GGAGGGGAGG AGAGAACGGC AGGCAGCTTA GAGCGGGGGT TCAACCACGC TGATCTCTTG
  GCTGCTCCTT TAACTCCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss46327754	mCV25429661	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss136832071	ENSMUSSNP4169306	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A	A
ss323108973	CHEV_9_96337336	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29646499					SNP	G	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96318970 () rs orientation: forward

Symbol	Name	Function Class
BC043934	cDNA sequence BC043934	within coordinates
Cpgi22163	CpG island 22163	111 bp proximal
Cpgi22164	CpG island 22164	586 bp proximal
Gm50488	predicted gene, 50488	within coordinates
Gm68666	predicted gene, 68666	763 bp upstream
Rr368835	regulatory region 368835	1079 bp upstream
Rr684963	regulatory region 684963	273 bp proximal
Rr684964	regulatory region 684964	774 bp proximal
Rr684965	regulatory region 684965	900 bp proximal
Tssr90963	transcription start site region 90963	1244 bp downstream