GACCACTTCC ACCGGGTGCT GCTGGCGCAT GGAGTGGATG CCCGTCCGGG AGGCCAGGCC CGGGCTCTGC CCTCGGCGCC ACGCGCTGAT TTCTTCTTAA CCAGCGCGCT TGAGGTGATC TGTGAAGCGT GGCTTCGCGA CCTGCTATTC ACCCGCGGCG CGCCCGCCTG GCTGAGGCGT CGCTACCTGC GGCTGCGTTA Y GAGGACCTGG TGTGGCAGCC CCAAGCCCAG CTGCGCCGCC TGCTGCGCTT CTCTGGGTTG CGGACACTCG CCGCGCTTGA TGCCTTCGCA TTCAATATGA CGCGGGGCTC GGCCTACGGC GCCGATCGTC CCTTCCACTT GTCTGCGCGG GACGCCCGAG AGGCTGTGCA CGCCTGGCGC GAACGTCTGA GCCAAGAGCA Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss46866419 | NES10963938 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | T | T | T | T | C | T | T | T | C | T | C | C | T |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs29647050 | SNP | T | T | T | T | T | T | C | T | T | T | C | T | C | C | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss46866419 | NES10963938 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: ChrX:19927073 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Chst7 | carbohydrate sulfotransferase 7 | Coding-Synonymous | ||||||
Noncoding-Transcript-Variant | ||||||||
Cpgi22642 | CpG island 22642 | within coordinates | ||||||
Rr690370 | regulatory region 690370 | 1264 bp distal | ||||||
Rr690371 | regulatory region 690371 | 1654 bp distal | ||||||
Tssr160634 | transcription start site region 160634 | 1260 bp downstream | ||||||
Tssr160635 | transcription start site region 160635 | 1242 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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