rs29647096 SNP Detail

Summary

• ID
  rs29647096
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:20414831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGATTTGG GCGAAGGCCC
  CTGGGAAGCT AGATTTGTTC ACCCCAATCC GGCGCTGAGA CTGCTCTGTG AGTAGCCAGT
  GAGCCCCGTG GCAGGAGCAA GGCAGCGGGA GTTTAGCTTC CCAGAGTTCG GCCATTGTTG
  TCACTGTCCC CTGCCCCTGG AGGCTGCAGC AGTGTTACCC TTTTGGTACA GGTACTTCAC
  K
  TGCAGCGCGG ACCCCTGATT ATCAGTCCTC TATCACCACC CTTCCCCCCC ACCCCGCCCC
  GCCCAAGCCA CCAGTTTGCA GCCAGAATTC CTGGTAGAAA CAGGTCCTTT GGCAGCACTG
  CCCCCACCCC TCCACACACA TCGCTTGCAA GACAAACTGT GGGGTTAAGC TATTGCAAAA
  CTCCAACATC TGATCTTGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46868234	NES10974986	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29647096					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46868234	NES10974986	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:20414831 () rs orientation: forward

Symbol	Name	Function Class
Rgn	regucalcin	1195 bp upstream
Rr690400	regulatory region 690400	within coordinates
Tssr160644	transcription start site region 160644	850 bp downstream
Tssr160645	transcription start site region 160645	357 bp downstream
Tssr160646	transcription start site region 160646	1114 bp upstream
Tssr160647	transcription start site region 160647	1188 bp upstream