rs29647102 SNP Detail

Summary

• ID
  rs29647102
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:20415556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGAATTC TTGACTGATC
  TCTCTCTCTT TTTTTTTTCC TGATAGTTTT TCTCTTCTCT TCTCTTCTTT CTCCCAGTTC
  ACTGGTCTTT GGCCTAAAGT CCAAGCATAG AATGTTCTTT GCCTGTGGGG TTCAAGGCTC
  CCTGCCAAAC TGGCCTCATG CAAGGAAGCA AGATACAACT AAGGGGGCTG TGAGTTCATC
  Y
  ATTCCAGTGG AGCTGGAGGC ATAGCTCTGT AGCAGAATAC ATTCAAGGTC CTAGTTCTAT
  CCCAGAACTA CCAGTACAAA ACAAGCAAGC AACTGTATAC ATCCCAGGGG AAAATGCCCC
  TCATACCTGC CATTATCTGA ATTGAAAATG AACATGAGTT GGGGTTGGAG ATAGGGACAG
  TGCCAGCTCT TCATCCCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46868240	NES10974988	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29647102					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46868240	NES10974988	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:20415556 () rs orientation: forward

Symbol	Name	Function Class
Rgn	regucalcin	470 bp upstream
Rr690400	regulatory region 690400	231 bp distal
Tssr160644	transcription start site region 160644	1575 bp downstream
Tssr160645	transcription start site region 160645	1082 bp downstream
Tssr160646	transcription start site region 160646	389 bp upstream
Tssr160647	transcription start site region 160647	463 bp upstream