rs29647295 SNP Detail

Summary

• ID
  rs29647295
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108606781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATATCCT GCATATCAGA
  TATTTACTTT ATGATTCATA ACTAGCAAAA CTAGTTAGTT ATAAAGTAGC AACAAAATCA
  TTTTCTGGTT GGGGGTCACC ACAACGTGAG GAACTGTATT AAAGGATCGC AGCACTGGGA
  AGGCAGAGAA TCACTCAGCT AATCAATAAT CAACCAACAA ATATTAACCA TGGGCAGATA
  Y
  TTAAAGACAG ACGGCATCCT TTAATGTTTT AGATGGTCTA AAACAACTTT AGCCTTTTCT
  TTTCTCTTTA TGTGAGACAG GTCTCACTGT GTACCTCAAA CTGGTCTGAA AGTCACTTTG
  TAGATGAGGC TGGCATCAAG TTCAGAGTGA TGCACCTGCC CATACTGCTT AAGGGTGTGT
  GCCAGATTTT TCTTTTTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46867723	NES10717319	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29647295					SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46867723	NES10717319	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108606781 () rs orientation: forward

Symbol	Name	Function Class
Gpsm2	G-protein signalling modulator 2 (AGS3-like, C. elegans)	Intron
Rr583292	regulatory region 583292	1552 bp proximal
Rr583293	regulatory region 583293	1859 bp proximal