rs29647379 SNP Detail

Summary

• ID
  rs29647379
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44217019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACCGAGC GGCTCCAGGA
  AGCCCGGCCT TCCGCAGGCT CCGGAGAGAG CCGCTTTAGC CGCCAAGGTA CGGGAGCCGC
  AAGCCTCCAC TCACCTGCCA GCGCCGCTGG TTTGCCCAGC GCCCCACCCA CCTCACACCA
  TCTACCCCGA GGCGTTTGAG CGACGACCAG CGACAGCCAA TCGCCGCTCT CGAGTCGACC
  R
  ACAGCCAATG GCCGCTGCGT CTGTCAGAGC CCGTGCGCAC CAAAACACGG AAGAGGCGGG
  AATCGTCCCG GAGAGGGCTC CGAGTCCCAA GGGGGAGAGT GAGGGACGAC CGGATGTGGC
  TGAAGTTCGC GTCACCTTCA AAAGTGGGTT GGGCCTGCTC CCGACTGTGC GCAGGCGGGA
  AGCTTTGAGG CTTGAATTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46328042	mCV23033148	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		G
ss47687450	NES11335337	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		G	G	G	G	A	G	G	A	G
ss136393658	ENSMUSSNP1759892	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29647379					SNP	A	A	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47687450	NES11335337	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44217019 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21648	CpG island 21648	within coordinates
Hinfp	histone H4 transcription factor	51 bp upstream
Rr195005	regulatory region 195005	1982 bp proximal
Rr206299	regulatory region 206299	within coordinates
Rr368726	regulatory region 368726	within coordinates
Tssr89139	transcription start site region 89139	34 bp upstream