rs29647905 SNP Detail

Summary

• ID
  rs29647905
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:20415748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTCATCTA TTCCAGTGGA
  GCTGGAGGCA TAGCTCTGTA GCAGAATACA TTCAAGGTCC TAGTTCTATC CCAGAACTAC
  CAGTACAAAA CAAGCAAGCA ACTGTATACA TCCCAGGGGA AAATGCCCCT CATACCTGCC
  ATTATCTGAA TTGAAAATGA ACATGAGTTG GGGTTGGAGA TAGGGACAGT GCCAGCTCTT
  M
  ATCCCAGGGC CTGGAACAGG CTACATACCT CAGCCATATA CCAAGCCTCT GGCTGTTAAC
  TTAATTCAGT ATATTATCAC TGATGTACAC ATTCCTAAAA CTGGCTGCTC CCCCCCCCCG
  CCCCCCCCCA GGGAAATCAA TAGCATCAAT GAATGAGGGA GAGGTGGCAG CATGAAAAGG
  TAACCTGCAG ACACCCAGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46868243	NES10974989	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29647905					SNP	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46868243	NES10974989	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:20415748 () rs orientation: forward

Symbol	Name	Function Class
Rgn	regucalcin	Intron
Rr690400	regulatory region 690400	423 bp distal
Tssr160644	transcription start site region 160644	1767 bp downstream
Tssr160645	transcription start site region 160645	1274 bp downstream
Tssr160646	transcription start site region 160646	197 bp upstream
Tssr160647	transcription start site region 160647	271 bp upstream