rs29647908 SNP Detail

Summary

• ID
  rs29647908
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:20416219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGTGCCAGG AGTCATTACA
  GCCCAGGTGT GGATAGTGGA GTTTTTCCTT TGTCTACTAT TTTAAAGGTA TCTTGAAAAA
  AAAAAACTTC ACTGGTAAGT TGACTGAAGA CGTTTCATGT CATGTCTTAT TAGCTCCTTC
  TTCCTACAAT CACCTCCTGT CTTGCTGTAC ACCTTGCTCC GATTGGGAGT TGAGGAACTA
  Y
  ATCCACTTGT CTATTTTGAT CCAATACTGG CATACCTAAG GGAGCTTTCC ATTTGTTCCC
  AGATGGCTGT GATAAAATTA ATCTTATAAT AAAACAAGTA ACATTTTTGA CTTCTCAGTG
  CATATAAAAG TCAGAATTTA CAGTGTACAG AAATGCTACT GAGTGTTCCT TAACTTAAAA
  AAAAATCCTT TATTGCTCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46868246	NES10974990	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29647908					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46868246	NES10974990	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:20416219 () rs orientation: forward

Symbol	Name	Function Class
Rgn	regucalcin	Intron
Rr690400	regulatory region 690400	894 bp distal
Tssr160645	transcription start site region 160645	1745 bp downstream
Tssr160646	transcription start site region 160646	263 bp downstream
Tssr160647	transcription start site region 160647	184 bp downstream