rs29648018 SNP Detail

Summary

• ID
  rs29648018
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:29893211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTTGTTTT TGTTTTTTGG GTTCTTCTTT TCCTCTCATT
  TTGAAGGTAT GTGTCCCAGG CAAGGAGCAA GAGCATAGCC TCCAAACAAA GGATAGCATA
  R
  CATATTTCAG GAGCTCACAG ACTAGATAAA TTTGGGGAAT GGTAATATCT GAGGTTAGAA
  TCAAATGGCA GTGTAATCAT TTATCAGTAT AAGAATTTAG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47865090	NES11673203	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29648018					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47865090	NES11673203	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29893211 () rs orientation: forward

Symbol	Name	Function Class
Ahcyl2	S-adenosylhomocysteine hydrolase-like 2	within coordinates
Tssr55312	transcription start site region 55312	1514 bp upstream
Tssr55313	transcription start site region 55313	1539 bp upstream
Tssr55314	transcription start site region 55314	1575 bp upstream