rs29648160 SNP Detail

Summary

• ID
  rs29648160
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:58036091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAATTAGCC TACCAGCTTC
  CCTGCGGTTT TATGGTTTGT TTGTTTGTTT TTGGTGGGGG GGGGGGGCGA AACTTTAGAA
  CAGTTGAACT TTACTGTTGA AACGTTCCTA GTGAACTTCC TCCCCGTTGC AGAAATTCGC
  CCCCCGCCCC CAACCATCTT CTCGGTCATT TGCTTAACAG CTTTCCACAT CTGCTCAATG
  M
  TTTCAAACAT GACCATTTCA ACATTGGGCA GATTTTTTTT CTACTGAGAA GTTCTTTCAT
  GTGTTCATAT ATATTTCTAT TAGAAATGTT TATCCAAGGA GCTGCTATGT GCCAGGCACT
  AAGAGTTCAG CAGAAAACAC ATTTAATAGA AACTTCTGCC TGTCAGCATT ACCCTAATCT
  CTGCTCTTCT CCGTGAAGAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss47367530	NES11058190	PERLEGEN	MM_PANEL2	f	SNP	C	A	C	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs29648160					SNP	C	A	C	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47367530	NES11058190	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58036091 () rs orientation: forward

Symbol	Name	Function Class
Cpgi276	CpG island 276	522 bp distal
Rr371334	regulatory region 371334	548 bp upstream
Rr396054	regulatory region 396054	895 bp downstream
Rr411384	regulatory region 411384	951 bp distal
Rr411385	regulatory region 411385	75 bp distal
Rr411386	regulatory region 411386	831 bp distal
Sgo2a	shugoshin 2A	within coordinates
Tssr6754	transcription start site region 6754	873 bp downstream
Tssr6755	transcription start site region 6755	860 bp downstream