rs29648163 SNP Detail

Summary

• ID
  rs29648163
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:58036198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGTGAACT TCCTCCCCGT
  TGCAGAAATT CGCCCCCCGC CCCCAACCAT CTTCTCGGTC ATTTGCTTAA CAGCTTTCCA
  CATCTGCTCA ATGCTTTCAA ACATGACCAT TTCAACATTG GGCAGATTTT TTTTCTACTG
  AGAAGTTCTT TCATGTGTTC ATATATATTT CTATTAGAAA TGTTTATCCA AGGAGCTGCT
  R
  TGTGCCAGGC ACTAAGAGTT CAGCAGAAAA CACATTTAAT AGAAACTTCT GCCTGTCAGC
  ATTACCCTAA TCTCTGCTCT TCTCCGTGAA GATGTTTGTG ATGGCGTTAG GGATGCCTAG
  ATAAATAAGA ATCTTTTCAT TGGATCCTTA TACTAGATCT GCAGACTATG TATAGATTGA
  GAATTGCAGG TACCTGACTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss47367533	NES11058191	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs29648163					SNP	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47367533	NES11058191	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58036198 () rs orientation: forward

Symbol	Name	Function Class
Cpgi276	CpG island 276	629 bp distal
Rr371334	regulatory region 371334	441 bp upstream
Rr396054	regulatory region 396054	1002 bp downstream
Rr411384	regulatory region 411384	1058 bp distal
Rr411385	regulatory region 411385	182 bp distal
Rr411386	regulatory region 411386	938 bp distal
Sgo2a	shugoshin 2A	within coordinates
Tssr6754	transcription start site region 6754	980 bp downstream
Tssr6755	transcription start site region 6755	967 bp downstream