rs29648764 SNP Detail

Summary

• ID
  rs29648764
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:20417004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTTGCAG TGAGCCATCT
  TTTCCCAGTG CAGGGGCTAA TATCACCCTG CTTGTCATTG TCCTGGATCT TTCTGGTTAA
  AGCCCAACTG AAAATGCTTT GAAACCATGT TGGCTGTGTC TGTGATTCCA TGTGTGATTC
  ACTTGAACTC AAATTGGAAG TGATGGCTCT TCCATGCTTT TCTCATCCTC TTGTATGGGT
  S
  ATAACGTTCC TAGCTTTCTT TGTTTTGGTT TGTGATGCTA GGCCTCAGGC AAACTCATGC
  TCATTGTGCC ACATTATTGT TTTGATGCTT AGGTATTATA GTGTTTCTTT CCTGATTGAC
  TTCCGATGAT AGCATCCAGA ATGGAAGACT CCATTAATAG CACAGCAAAA GCCATCTACC
  CTGGTTAGGC CAAAATCACC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46868252	NES10974992	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29648764					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46868252	NES10974992	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:20417004 () rs orientation: forward

Symbol	Name	Function Class
Rgn	regucalcin	Intron
Rr690400	regulatory region 690400	1679 bp distal
Tssr160646	transcription start site region 160646	1048 bp downstream
Tssr160647	transcription start site region 160647	969 bp downstream
Tssr160648	transcription start site region 160648	1558 bp upstream