rs29648767 SNP Detail

Summary

• ID
  rs29648767
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:20417157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGAAGTGA TGGCTCTTCC
  ATGCTTTTCT CATCCTCTTG TATGGGTGAT AACGTTCCTA GCTTTCTTTG TTTTGGTTTG
  TGATGCTAGG CCTCAGGCAA ACTCATGCTC ATTGTGCCAC ATTATTGTTT TGATGCTTAG
  GTATTATAGT GTTTCTTTCC TGATTGACTT CCGATGATAG CATCCAGAAT GGAAGACTCC
  R
  TTAATAGCAC AGCAAAAGCC ATCTACCCTG GTTAGGCCAA AATCACCATT TTAAAACAAA
  AACCAACAAC GGATGTAAGA TGTATCTATC ACTCACTTCT TTGTGAAAAA GAATTCTTAG
  GCTTCAAAAG CATCAACCAG GACTGCACAA CTGTGGTATT CCTGACAGGA CTCCCAAGAG
  AGCTTTGTGG TTTAAGATAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46868255	NES10974993	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29648767					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46868255	NES10974993	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:20417157 () rs orientation: forward

Symbol	Name	Function Class
Rgn	regucalcin	Intron
Rr690400	regulatory region 690400	1832 bp distal
Tssr160646	transcription start site region 160646	1201 bp downstream
Tssr160647	transcription start site region 160647	1122 bp downstream
Tssr160648	transcription start site region 160648	1405 bp upstream