rs29648905 SNP Detail

Summary

• ID
  rs29648905
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:20653143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGGCAGA GGCAGGCGGA
  TTTCTGAGTT CGAGGCCAGC CTCACTACAA AGTGAGTTCC AGGACAACCA GGGCTATACA
  GAGAAACCCT GTCTCGAAAA AAACCAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAGAAAG
  AAAGAAAGAA AGAAAAATTA TTATACAGAC TTTCTTTTCA TATAGAAACT GTCATGACTG
  Y
  GACACCAGAA ACATAGATGC AAACAGCTTT TTTACTGTTG TAGGATATTT GATCACACTT
  TGAGCCCCTA GATTGTGTTA TTTACTGAAA AAACCTGCTT TAGTTGTAAC TCAGCCCATA
  ACACACACCT TTAATTCCTC TGGCTAGAAT ACAGACACAC CCTTACTACA TACCTTTAAT
  ACTAAACAGT GAAGGGAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46869323	NES10959382	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29648905					SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46869323	NES10959382	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:20653143 () rs orientation: forward

Symbol	Name	Function Class
Rr5774	regulatory region 5774	343 bp distal
Rr5775	regulatory region 5775	58 bp proximal
Rr5776	regulatory region 5776	1458 bp proximal