rs29649012 SNP Detail

Summary

• ID
  rs29649012
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:58036349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTGTTCA TATATATTTC
  TATTAGAAAT GTTTATCCAA GGAGCTGCTA TGTGCCAGGC ACTAAGAGTT CAGCAGAAAA
  CACATTTAAT AGAAACTTCT GCCTGTCAGC ATTACCCTAA TCTCTGCTCT TCTCCGTGAA
  GATGTTTGTG ATGGCGTTAG GGATGCCTAG ATAAATAAGA ATCTTTTCAT TGGATCCTTA
  Y
  ACTAGATCTG CAGACTATGT ATAGATTGAG AATTGCAGGT ACCTGACTAG GTCACTTTGT
  AGCCTACTAT AGGACCGCTT CCGGGTTGGG AAGAGTTGGA GGGCAGTTAG GGTGAGGAAG
  GTAAAGATAA TGAGGAATCT TGTGGAATCT AGGGATTTTT GTGATGGACA TAAAAGGAAC
  ACTGAGATTG TTCTGTGGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss47367542	NES11058194	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs29649012					SNP	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47367542	NES11058194	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58036349 () rs orientation: forward

Symbol	Name	Function Class
Cpgi276	CpG island 276	780 bp distal
Rr371334	regulatory region 371334	290 bp upstream
Rr396054	regulatory region 396054	1153 bp downstream
Rr411384	regulatory region 411384	1209 bp distal
Rr411385	regulatory region 411385	333 bp distal
Rr411386	regulatory region 411386	1089 bp distal
Sgo2a	shugoshin 2A	within coordinates
Tssr6754	transcription start site region 6754	1131 bp downstream
Tssr6755	transcription start site region 6755	1118 bp downstream