rs29649291 SNP Detail

Summary

• ID
  rs29649291
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108696676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTGGCTGT ACCTCTTACA
  GGTTCTTCAG TTTCCCAAAA TGGCATCAGC AAGTAGGGAA TGAATATCAA TGAAGACATG
  GCCTATGGGA GCACTTCATG GTGAGACTGT AACACAGGCA ATGCCCTGTG AAAGCCCTGG
  GACTTACAAG GGTACCTTTA GACTCTGTAA CCTGGGCTGT CTCTCAGAAC ATAACTGCAT
  Y
  AACTATGACT TGACGATACC TGACAAGTAT CATTACCCCA CCCCCGAATT TAGAATCGCA
  CACTGCTGGG CTGCTGAAAT GGCTAAGAAA AGGCACCTTC TGCCAAGCTT GACAACCCCA
  GCTGGAATCC ATATGGCACA GACAGCTGAT TCCCACAAGC GGTACTCTGA CCTTTCTCAA
  CACCAGCCAC CCCCAGCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46868839	NES10712336	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29649291					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46868839	NES10712336	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108696676 () rs orientation: forward

Symbol	Name	Function Class
Rr583314	regulatory region 583314	1065 bp distal
Rr583315	regulatory region 583315	within coordinates
Rr583316	regulatory region 583316	1941 bp proximal