rs29649438 SNP Detail

Summary

• ID
  rs29649438
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:58086037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTAGCAG TGGTCCCTCA
  GGGTGGAATA GCTCTTTACC TGACACTCTT CTTTTGAATG GCAATATCAA ACTCACTTTA
  TTGCCCAGCC AGCCTTGGCC CAGCTCCACC CGCAGGATGG AGGCAGCTTA AGGTTCATGG
  CCAGTTACAA GCAATTAGAG AGTGTCAGCC CCGATCTAGA AGGGAAATAA TTAAGTTGGT
  R
  GAGGCTGTTC AGAAATTGGA ATTCTGAGGT CTAATTTTAA TTCTGCCACC AGCACTCCAG
  CTGTGACCCT GAATAGATCA CTCTGATTTT CAGATGCTGT GTCTGTAAAA TGAGTGTGTG
  CTGAAGAGGA AACACAGATA AAGAGCCTGA GCCATCACTC CTAACCCTCT TCCTGGAGGC
  ACCCAGGGGG TGCTCAGTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47367938	NES11056077	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29649438					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47367938	NES11056077	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58086037 () rs orientation: forward

Symbol	Name	Function Class
Aox1	aldehyde oxidase 1	within coordinates
Gm69841	predicted gene, 69841	1535 bp upstream
Tssr11773	transcription start site region 11773	1602 bp upstream