rs29649600 SNP Detail

Summary

• ID
  rs29649600
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:29894714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCCCACGG GTGCAAAGGG
  AGCTTTTACA CTTCTCCTGT ATAAACTGAA GAGTAGCCCA CGCCAGATGT GGTGACCCAT
  GCCTGTAATC CCAGCACTCG AGGGAAAGGC TAGAGGATCC TGAACTTGAG GCCAGCCTGG
  ACTATACAGT GGCACTGTCT TTAAAACTAA ACTAAACAAA CAGACTGGAA GCATTCCAGC
  Y
  GTCCAGGAAG TGACACTGTA ACTACCTGAA GAGCTCGGTG CAGGCTTGTA AGGGAGACTC
  CCCTGCGGCT GGCTGAGTTA CTTGTCCTGC TTTATTTCTG CAGTATGGAT GGATTCCGAC
  TAGTGAAGCT GAATGAAGTC ATCCGACAGG TCGACATTGT TATTACTTGC ACAGGTATGG
  TTGTGGTGCG TCCAGTGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47865112	NES11673055	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29649600					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47865112	NES11673055	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29894714 () rs orientation: forward

Symbol	Name	Function Class
Ahcyl2	S-adenosylhomocysteine hydrolase-like 2	within coordinates
Tssr55312	transcription start site region 55312	11 bp upstream
Tssr55313	transcription start site region 55313	36 bp upstream
Tssr55314	transcription start site region 55314	72 bp upstream