rs29649637 SNP Detail

Summary

• ID
  rs29649637
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:20667946 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTTATGT ATGTGAGTAT
  ACAGTATGTT CCTGTCTTCA GACACACTAG AAGAGGGCAT CAGATGCTAT TACAGATGAC
  TGTGAACCAC CATGTGGTTG CTGGGAATTG AGTGCAGGAA GAGGAGTCAG TGCTCTTAAC
  CACTGAGCCA TCTCTCCATC CCATAATAGT TTTATTTTGT TGTGGTTTGC AGGAGCATTC
  R
  TTTTGAAACG TGACAGCATG GCTGGAAACT TCTGAGAGTG TACAGAAAAT AAATTTACTG
  GTGGAACTTG CCTTTATTCC AGAAGTCGGA GGCACAGCAG ACAGATCTCT TGTGAATTTA
  AGGTCAGCTT GTTCTATAAA GGGAGTTCCA GGAGAGTCAA GACTATTATA CAGAGAAACC
  TTGTCTGGGA AAACAAAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46869425	NES10959063	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29649637					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46869425	NES10959063	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:20667946 () rs orientation: forward

Symbol	Name	Function Class
Araf	Araf proto-oncogene, serine/threonine kinase	within coordinates
Gm26065	predicted gene, 26065	1271 bp upstream
Rr9663	regulatory region 9663	1546 bp distal