rs29649848 SNP Detail

Summary

• ID
  rs29649848
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108608314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAGAGATA CACAAAACTT
  AAGACCATCC CGGTCATGGC CCTCACCCCT AATAGAGGAG ATGACCAGAC TCCCAGGCCT
  TCTGATTACC TGCTCGTGAG CTATAACTGC ATCCCTGAAG TTGCCGAGGA GGTAGTGTGT
  GTTGCCAAGG TTCCCAAAGG CTCGCCCCTG TGCTGCTCGG TCACCTAGAG CAGTTACTAA
  S
  GACAGGTTTT CCCTTAGTGA TGACAAAAGG TGGTGAAAAT GTAAGTTTAG GAAAAGTTCT
  TAGCTCATTT ACAGGTAGTT TGTTCTTCTC ATAGCGGTGG ATGTAAGGCC AGGGCCTATG
  TGTGCTAGGC AAGACTAGCC ACAGAGCTAT AACTCCAGCC CTAGGGTTAA CTTTACTCAT
  CAGAAAGAAG CAAGCTTATA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46867756	NES10717291	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29649848					SNP	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46867756	NES10717291	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108608314 () rs orientation: forward

Symbol	Name	Function Class
Gpsm2	G-protein signalling modulator 2 (AGS3-like, C. elegans)	Coding-Synonymous
Rr583292	regulatory region 583292	19 bp proximal
Rr583293	regulatory region 583293	326 bp proximal