rs29649982 SNP Detail

Summary

• ID
  rs29649982
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:58810163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAT GCTGCAGTCC CATTATAGAC
  R
  ACACAGTAAA ACCCTTGGCT CGGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46328748	mCV23508010	ABI	CRAMUS_MOUSE	f	SNP		G	G					A	G
ss52021350	NES15034452	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	A	G	G		G	G	A		G	A	G		G
ss136525194	ENSMUSSNP4715678	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G
ss322974022	CHEV_9_58750687	CHEVERUD	SCREENING_POP	f	SNP												G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29649982					SNP	G	G	G	G	A	G	G	A	G	G	A	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52021350	NES15034452	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:58810163 () rs orientation: forward

Symbol	Name	Function Class
Neo1	neogenin	within coordinates
Rr196035	regulatory region 196035	within coordinates
Rr212064	regulatory region 212064	318 bp proximal