rs29650054 SNP Detail

Summary

• ID
  rs29650054
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108696691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACAGGTTC TTCAGTTTCC
  CAAAATGGCA TCAGCAAGTA GGGAATGAAT ATCAATGAAG ACATGGCCTA TGGGAGCACT
  TCATGGTGAG ACTGTAACAC AGGCAATGCC CTGTGAAAGC CCTGGGACTT ACAAGGGTAC
  CTTTAGACTC TGTAACCTGG GCTGTCTCTC AGAACATAAC TGCATTAACT ATGACTTGAC
  R
  ATACCTGACA AGTATCATTA CCCCACCCCC GAATTTAGAA TCGCACACTG CTGGGCTGCT
  GAAATGGCTA AGAAAAGGCA CCTTCTGCCA AGCTTGACAA CCCCAGCTGG AATCCATATG
  GCACAGACAG CTGATTCCCA CAAGCGGTAC TCTGACCTTT CTCAACACCA GCCACCCCCA
  GCCCCAATAA AAAATAATTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46868842	NES10712337	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29650054					SNP	G	G	G	G	G	G	A	G	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46868842	NES10712337	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108696691 () rs orientation: forward

Symbol	Name	Function Class
Rr583314	regulatory region 583314	1080 bp distal
Rr583315	regulatory region 583315	within coordinates
Rr583316	regulatory region 583316	1926 bp proximal