rs29650060 SNP Detail

Summary

• ID
  rs29650060
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108696908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTACCCCAC CCCCGAATTT
  AGAATCGCAC ACTGCTGGGC TGCTGAAATG GCTAAGAAAA GGCACCTTCT GCCAAGCTTG
  ACAACCCCAG CTGGAATCCA TATGGCACAG ACAGCTGATT CCCACAAGCG GTACTCTGAC
  CTTTCTCAAC ACCAGCCACC CCCAGCCCCA ATAAAAAATA ATTAGCTGAA AATGTAAAAC
  M
  GTACACTTTG TGCTGTGCTG GAAAGATGGC TCAGCAGTTA AAGACTGCTT TTCCAGAGGA
  CCTGGGTTCA ATTTCCAACA CACACACGGG AGCCCACAAC TGTCTGTAAG TCCTGTTCCA
  GAGAAGCCAA CTCTCTCTGG CCTCTGTGGG CATAAGGCAT GCGTGTGGTA AACAACCATA
  CATGCACACA AAAACCTAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46868848	NES10712323	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	C	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29650060					SNP	A	A	A	A	A	A	A	A	A	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46868848	NES10712323	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108696908 () rs orientation: forward

Symbol	Name	Function Class
Rr583314	regulatory region 583314	1297 bp distal
Rr583315	regulatory region 583315	within coordinates
Rr583316	regulatory region 583316	1709 bp proximal