rs29650506 SNP Detail

Summary

• ID
  rs29650506
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:29896676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGTAACAA ACTGGAAGAA
  GAAAAGGCAG GGGCATCAGC TAGTCTGAAC AGGAGTCATG AGTGCTCTGG AATAGTCCAT
  GTCTGTTCAC TTTCCAGCCC TAGGGCCTGT GCTTAGGGGC AAAATAAAGC TTTTTCATCG
  CAACCATTTC AAATGATTAC CTCCTTACAC CCAGGCTTGG TACCTACTCA GACTGTGTCA
  S
  AGTGGACTCA GTATATGGGG ATGTTTAGCT TTACATAAAG ACACGTAGTC TGGTCCGTGG
  AAACACTCAA AGGAGAGATC TGTGGGCTAG GAGAAGTACA TTGCCTTAGA ATGGCTGTGC
  CTATCAACCA CTGCAGTTTC TTTTCTCTCC CTTTTTCACT GGCCTAGGTC TCCCCTTAAC
  ATCTCTCTCA AATCACTGTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47865118	NES11672930	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29650506					SNP	C	C	C	C	C	C	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47865118	NES11672930	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29896676 () rs orientation: forward

Symbol	Name	Function Class
Ahcyl2	S-adenosylhomocysteine hydrolase-like 2	within coordinates
Rr368038	regulatory region 368038	382 bp upstream
Rr368039	regulatory region 368039	648 bp upstream
Tssr55312	transcription start site region 55312	1944 bp downstream
Tssr55313	transcription start site region 55313	1901 bp downstream
Tssr55314	transcription start site region 55314	1878 bp downstream