rs29651762 SNP Detail

Summary

• ID
  rs29651762
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108610174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTATTTTA AATACAAATT
  GAAACAGCCT TCCCTAGTTA ATTTTCATGC ATTTAATTAA ACTCTAGGGT TGCTCCATTA
  CTAGTTTGCC TAAAAGTTAG TTTTCAAAAG CAATATCATA AATTAAAACA CTTCAGATAT
  ACTGTTGGTG AATAGAAGGT TTTGTTTTAA GAGTGAATTT AGACAGAATA TAAAAGGCTG
  R
  AATTACCGTG CAAGAGTTAA GTCATGGTGG TGGTATTCTA ACGCTTTGGC GTAGTCATGC
  AAGTAGAAGT AAGCATTGCC CAGTTGGCTG TAAATAGCAC TGAGTGTTTT GAGGTCTTCA
  GTTCCAACTT GAACTGCGGC TTCAAAAAAT GACACGCCAG CGCGGCAGTC CCCTGATTTA
  CATAGACGTT CTCCTTCCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46867780	NES10717151	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29651762					SNP	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46867780	NES10717151	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108610174 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gpsm2	G-protein signalling modulator 2 (AGS3-like, C. elegans)			Intron
				Splice-Site
Rr583292	regulatory region 583292			1820 bp distal
Rr583293	regulatory region 583293			1351 bp distal
Tssr35159	transcription start site region 35159			1582 bp downstream
Tssr35160	transcription start site region 35160			1601 bp downstream
Tssr35161	transcription start site region 35161			1636 bp downstream