rs29651825 SNP Detail

Summary

• ID
  rs29651825
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108698027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGAAATAA AGGAATGGGG
  CAATGCCATG AAAGACAGTC AAGGCTACAG AGAAAGATCC TGGTCTTTTT TTTTTTTTTT
  TTTTTTTTTT TAAATAAAGT TCTGGGAGAA CACCCACCAA GTTCTGACTT GCTCAATCTG
  TAACCTGTGC TCTCCTGTCT TCTAGCTCAG GGCTGTCCTT TCTTGTAATT CTGTCCCATT
  R
  GCAAACCAGA AAAACCAGCT AGTTATGAAA AACTGTATCG CTGATACTGA GGCCAGGGGC
  TCATCCCTAC CTGAGGTCGG GGCTCCTGTG AACAGTCAGT TTCCTTACAA GAGGGAAGCC
  ACACCATGGG ATTCTTTAGG AAACAAAGTT CTGCAGGTAT CTTTTTTCTT TAAAGATTTT
  CTGATTAACT TTGAGTGTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46868863	NES10712222	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29651825					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46868863	NES10712222	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108698027 () rs orientation: forward

Symbol	Name	Function Class
Rr583315	regulatory region 583315	992 bp distal
Rr583316	regulatory region 583316	590 bp proximal