rs29651828 SNP Detail

Summary

• ID
  rs29651828
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108698399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGATTTTC TGATTAACTT
  TGAGTGTTCT GCACCCTTGT ATATAAGTGT GTCATATACA CGCGACAGCC ACTTACGTGG
  TTGCTTCGAA TTGAACCCAA GTCCTCTGGA AGAGCAGTAC ATGCTCTTAA CCTCTGAGCC
  ACCTCTCCAG TCCCATCCTC TATGTTAAAG GCATTTCAGA GAAAGTACTA TACAGGCTAA
  M
  CAGGTTATAT TTAGGATCAT GTATTTATAT ACATTTATAT ACTTATAAGC ATGCAGTAAC
  AGAAAATAGA AACTAGGTCA CTGTCACCAT CTATGAGCTA GAGGACAGGG AGTGAGCGCT
  GTGTCACAGG CAGGAGGCAG GTAGCAGGGC ATTAGCACTG GGTGGAGCTG CTATAACTGG
  CTTCACTAGT GCAGCTGGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46868866	NES10712168	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29651828					SNP	A	A	A	A	A	A	A	A	A	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46868866	NES10712168	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108698399 () rs orientation: forward

Symbol	Name	Function Class
Rr583315	regulatory region 583315	1364 bp distal
Rr583316	regulatory region 583316	218 bp proximal