rs29652379 SNP Detail

Summary

• ID
  rs29652379
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:58082503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAATGATTT ACTGTGTTTC
  AGTGTGCCAC AAACATTTCA TAAGATATTT ACATTTTGTA CTGTAATCAG AGACCTACAT
  AATGATGAGG GCAAATATCC AGGGCTAAGA CACAGTGTGC TCCTACCTGA TTCTCAGACA
  CTTACTTACA CGCATAGACT CTTCATTCTT CAGTCTGGCC CTCTTTTTAG CAGCCTGTGT
  Y
  CCAGCTTCAT ACAAAGGGTG GGTGTAAGCT GCAACATCCA AAAGGAAGCA GGAAGTTATA
  AGACTTAAAC GGCAGCCATT GCTGAATTCA TACTGAAGTT TCTTACACAT GTCTGTGACG
  GCGTTGCTTC CTAAGGTCAG GGCTATTCTA GAAAGAAAAA CATATAGAGA TGTTCTCTTT
  AACAGAGCTC CTTCCAGTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47367872	NES11056155	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29652379					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47367872	NES11056155	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58082503 () rs orientation: forward

Symbol	Name	Function Class
Aox1	aldehyde oxidase 1	within coordinates
Gm69841	predicted gene, 69841	1752 bp downstream
Tssr11773	transcription start site region 11773	1929 bp downstream