rs29652727 SNP Detail

Summary

• ID
  rs29652727
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108610568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCAAGGC CAGCTCAAGG
  CAAGAAGCTT CCATTCTGCA GAATTATATA TGACAGACAC ATTACAACTG GATCAGTGAT
  TTTAACTCCC AATACTATAA TAAATGTGGA CTTTGTGGCT ACCCCCAATC AAACCAACAC
  TTAGTTGAAT TACAAACAAG TTACTGACAA AAGAGTAAAC TTAACTGTAG CAACAGCCAA
  W
  GTGCCTACTC CGATTTCTGA GCCTCAGAGG TCTCTTCAAC TGAGTTGCTA AATGTCTTAT
  ATAGTTTGTT CTAACTGGCC TGTGTAGAGT AACCCACTTT ACTAGTGAGG CAATCTAAAG
  CAGTGTTTCA ATCCACCCAT CCATTATTCC ATCCACCTAC ATCAGTCTCA TCCACCACAC
  ACACACACAC ACACACACAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46867786	NES10717153	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29652727					SNP	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46867786	NES10717153	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108610568 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gpsm2	G-protein signalling modulator 2 (AGS3-like, C. elegans)			Intron
				Noncoding-Transcript-Variant
Rr583293	regulatory region 583293			1745 bp distal
Tssr35159	transcription start site region 35159			1188 bp downstream
Tssr35160	transcription start site region 35160			1207 bp downstream
Tssr35161	transcription start site region 35161			1242 bp downstream