rs29652754 SNP Detail

Summary

• ID
  rs29652754
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108699712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGCTAAC CCAATCTGTA
  AGTTGTGTTA CGCTAGAGAA CCCTGACTAA TACAGTTGTG AAGCAGTGCT GGGACTCAGT
  TGTGAAGCAG TGCTGGGGCT CAGTTGTGAA GCAGTGCTGG GGCTCAGTGG TAGAGCACTT
  GCTGAACACG GTGAGAGCCT GTGTTAAATC CCTAGCATTG GAAGAAACAA CAACAGTGAT
  K
  CCATCCACTA ACAGTGTAAG CAAGCACACA CATGCTGTGC CACTGGTAGC AATTTGCATT
  ATGGAATATT TATGTAAGTT GGCAGACATT CACATCCACA GAATGCAGCA TTCCCTGTAA
  AAATAAAAGT CTGCAGGAGC AATTCAAAGT TAGAATGCTC TGAGGTCAGG CAGAGATCTG
  AAATAAAGAC TCCCTGTGGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46868872	NES10712069	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29652754					SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46868872	NES10712069	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108699712 () rs orientation: forward

Symbol	Name	Function Class
Rr583316	regulatory region 583316	680 bp distal
Stxbp3	syntaxin binding protein 3	784 bp downstream