rs29652760 SNP Detail

Summary

• ID
  rs29652760
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108701508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAACCCTTG TCACTGAGCA
  TGCTCAGTAA CTCTTCAGAA ATTTTGCCCA TCACAAGTGT TTTGTCTGAT TTGTACTTTA
  TTGGTGTCTA GTAAAGAGAA AAATGGATTT TTCTAGCCTC GTTACAGAAC TGCAGCAGTT
  GTCATTTTCA CACAGAGACT GTAAGCAGGC CATACAACTC CTGCAGCTGT CTGGGCTAGG
  M
  GGCTTTCTAT CTGCAGCGGC TTCACTGGAA AACATTCTAA TTTACTTTAC TATGACCGTG
  TGTGCACATG CATGTACACG TGTGTGCACA TGCATGTACA CGTGTGTGCA CATGCATGTC
  ATGGCTCACG CGTGGAGGCC AGAGGATGCC TTTCAGGAGT AGGCTTTCTC CTGCCACTGT
  GAGTTCTGGT AGTGAAGGTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss46868878	NES10712032	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C		A	C	A		C
ss320866897	CHEV_3_108597110	CHEVERUD	SCREENING_POP	f	SNP										C				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs29652760					SNP	C	C	C	C	C	C	C	C	C	C	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46868878	NES10712032	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108701508 () rs orientation: forward

Symbol	Name	Function Class
Gm66359	predicted gene, 66359	1749 bp upstream
Rr583317	regulatory region 583317	1477 bp proximal
Rr583318	regulatory region 583318	1760 bp proximal
Stxbp3	syntaxin binding protein 3	Intron