rs29652943 SNP Detail

Summary

• ID
  rs29652943
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:58034611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTGGTATTA AAGGTTCCCA AGTGCTGGTA TTAAAGGTAT
  GCACCATCAC TGCCTGGCTT CTATTTGTAT TTTTAATATG ATGGAACAGA GCAGTTTTTT
  W
  AAATATCGTT TCTCGAAATT CTACATATAT ATATTATTAT TAACCTTTTG TAAAAAGAAC
  CAAACTGACT TGAAAAATAA GACTAACACA TTTTAAAATA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss47367494	NES11058282	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs29652943					SNP	T	A	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47367494	NES11058282	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58034611 () rs orientation: forward

Symbol	Name	Function Class
Cpgi276	CpG island 276	272 bp proximal
Rr396054	regulatory region 396054	284 bp upstream
Rr411384	regulatory region 411384	29 bp proximal
Rr411385	regulatory region 411385	530 bp proximal
Rr411386	regulatory region 411386	628 bp proximal
Sgo2a	shugoshin 2A	Intron
Tssr6754	transcription start site region 6754	528 bp upstream
Tssr6755	transcription start site region 6755	609 bp upstream