rs29653042 SNP Detail

Summary

• ID
  rs29653042
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:30167299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCAG CACCCCTAAC TGCTCAATCT
  Y
  GGGCCACACT AGCTAGGCTG GGAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45931454	mCV24692361	ABI	CRAMUS_MOUSE	f	SNP	T	T	T				C		T
ss47867362	NES11676379	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T		T	T	T	C		T	C	T		C
ss133095114	ENSMUSSNP5459508	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T
ss321776201	CHEV_6_30117300	CHEVERUD	SCREENING_POP	f	SNP												T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29653042					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47867362	NES11676379	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:30167299 () rs orientation: forward

Symbol	Name	Function Class
Mir182	microRNA 182	1308 bp upstream
Mirc35	microRNA cluster 35, including Mir182 through Mir183	within coordinates
Mirc35hg	microRNA cluster 35, host gene	within coordinates
Rr627709	regulatory region 627709	within coordinates
Rr627710	regulatory region 627710	1770 bp proximal