rs29653285 SNP Detail

Summary

• ID
  rs29653285
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:58082769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAACGGCAG CCATTGCTGA
  ATTCATACTG AAGTTTCTTA CACATGTCTG TGACGGCGTT GCTTCCTAAG GTCAGGGCTA
  TTCTAGAAAG AAAAACATAT AGAGATGTTC TCTTTAACAG AGCTCCTTCC AGTCCGACTC
  ACAGGAACTA AGTATGGCTG TGGAGGCGGG GGCTGTGGGG CCTGCACAGT GATGATCTCG
  M
  GGTACAACCC CAGCACCAAG GCGATCAGGT AGGTGCAGCC AAGTCCAGTT AGGGGTGAAC
  TTTTCAGTCC TTTGTTTTAT TCTCTCATTT GGTGAATGTG TGTAGAACGT CTACTATGGG
  GAAAGAACTA TACTGAGCAC AGAGGATTCC CATGATAAAC AAGAATACGG ATAGACTGGA
  AAAGTTACCC CCTTCAGGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47367878	NES11056157	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29653285					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47367878	NES11056157	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58082769 () rs orientation: forward

Symbol	Name	Function Class
Aox1	aldehyde oxidase 1	within coordinates
Gm69841	predicted gene, 69841	1486 bp downstream
Tssr11773	transcription start site region 11773	1663 bp downstream