rs29653682 SNP Detail

Summary

• ID
  rs29653682
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108702476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAAAACAC AAAGCAAACA
  TGCTGTCAGC ACTCCCAAAG CCACGCGGCG TGCATCTCAA ACTCACCTTT GGAAGCAATA
  ACGAAGCAAT CTAACCGTGG TGCTTTCCCT ACAGTAATTT AGGCAAAGGC TGCACACCCC
  CCCCCCCTTT CAGATTTCAA TTTGAATAGA TCACATAGTT TTATTTGTGG TGAGACAGTA
  R
  GAAAAAGATC AAGGCTAGAT CTAGGAGACA TATATAAAAC CTTATTTCCA AAAAGTATAG
  TAAAAACCAC ACAGTCTAGG CTTAGTATTT TTATTTATAA AGCGAACATT TTATTTTAAT
  ATTTAAAATT TTAAAACATT TTTATTTTGT GTATGGGTGT TTTGCCTACA TGTAAGGCTG
  TGCACCATGT GCATGCAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46868890	NES10711974	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29653682					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46868890	NES10711974	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108702476 () rs orientation: forward

Symbol	Name	Function Class
Gm66359	predicted gene, 66359	781 bp upstream
Rr583317	regulatory region 583317	509 bp proximal
Rr583318	regulatory region 583318	792 bp proximal
Stxbp3	syntaxin binding protein 3	Intron