rs29653946 SNP Detail

Summary

• ID
  rs29653946
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:58034824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGAAATTCT ACATATATAT
  ATTATTATTA ACCTTTTGTA AAAAGAACCA AACTGACTTG AAAAATAAGA CTAACACATT
  TTAAAATATA GTTGAAATAG TTTAAAATGC CACTCTGTGT ACTCTGCTAA AATGGAGTAT
  CATTGCAGCA CTTCCAAGTG CAAAATTGAG AAAGGCTTTT AAGTGAAGTG TAAAGAAGCA
  R
  GGATCACAAT TGGAAGGCAA GAATGCAGAA ACTGGATGCA GACAAATAAT CACACAGTGA
  ACAACACAAA GCCCTGCGAA GGACTAGAGG TGCCTGCCAA CCCTCAGAGT GTCCCTTTAT
  CCGTGGTGAA TGGCCCTCTC TGTCAGGGCT GGTGGAAATG GCTACCAGAA GCTCAGAGAG
  GCAAGGAGAA CCTTTTCACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss47367497	NES11058283	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs29653946					SNP	A	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47367497	NES11058283	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58034824 () rs orientation: forward

Symbol	Name	Function Class
Cpgi276	CpG island 276	59 bp proximal
Rr371334	regulatory region 371334	1815 bp upstream
Rr396054	regulatory region 396054	71 bp upstream
Rr411384	regulatory region 411384	within coordinates
Rr411385	regulatory region 411385	317 bp proximal
Rr411386	regulatory region 411386	415 bp proximal
Sgo2a	shugoshin 2A	306 bp upstream
Tssr6754	transcription start site region 6754	315 bp upstream
Tssr6755	transcription start site region 6755	396 bp upstream