rs29653949 SNP Detail

Summary

• ID
  rs29653949
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:58034938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGGCAAGAA TGCAGAAACT GGATGCAGAC AAATAATCAC
  ACAGTGAACA ACACAAAGCC CTGCGAAGGA CTAGAGGTGC CTGCCAACCC TCAGAGTGTC
  M
  CTTTATCCGT GGTGAATGGC CCTCTCTGTC AGGGCTGGTG GAAATGGCTA CCAGAAGCTC
  AGAGAGGCAA GGAGAACCTT TTCACGCTCG CTGCAGCCCG                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss47367500	NES11058284	PERLEGEN	MM_PANEL2	f	SNP	A	C	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs29653949					SNP	A	C	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47367500	NES11058284	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58034938 () rs orientation: forward

Symbol	Name	Function Class
Cpgi276	CpG island 276	within coordinates
Rr371334	regulatory region 371334	1701 bp upstream
Rr396054	regulatory region 396054	within coordinates
Rr411384	regulatory region 411384	within coordinates
Rr411385	regulatory region 411385	203 bp proximal
Rr411386	regulatory region 411386	301 bp proximal
Sgo2a	shugoshin 2A	192 bp upstream
Tssr6754	transcription start site region 6754	201 bp upstream
Tssr6755	transcription start site region 6755	282 bp upstream