rs29653984 SNP Detail

Summary

• ID
  rs29653984
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:30167527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGCCCCGC CTGCCTGCGA
  TCAATGGAGC CAGATCGCAT TTCCAAGAGC CAGAGGACTG CAGAGCTGGG GCAGGGACCC
  GGATAATGGC CTGGATTGAA TAAGCAAATG CAGGGGTGGG GGAAGGGCGA AAGTCTGGAA
  TAATCCACCT CACAGGGACT CTGGGGAGCG GCTGGCCCAG GCAACCCCAA CACCAGGCAA
  Y
  GAGGCAAGGA GCCTACCCAG GAGGCAGCAA CTCAGGCACC TAGGAGCCAC CGAGCCCGAA
  CAATATAAGA AGGTCCCCAG TGGATTAAAC TGCACCAACT GCCCTGAGAG GGTAAGGGTA
  AATCCTTCCG CAGGATCAGA CAGCCAGGAA GAAACTGGTC CTGCTTGACA GGGTGAGCCC
  TCCCCTCCTA CCGCACCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ
ss47867364	NES11676380	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ
rs29653984					SNP	T	T	T	T	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47867364	NES11676380	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:30167527 () rs orientation: forward

Symbol	Name	Function Class
Mir96	microRNA 96	1918 bp downstream
Mir182	microRNA 182	1536 bp upstream
Mirc35	microRNA cluster 35, including Mir182 through Mir183	within coordinates
Mirc35hg	microRNA cluster 35, host gene	within coordinates
Mirc40	micro RNA cluster 40, including Mir96 through Mir183	1918 bp proximal
Rr627709	regulatory region 627709	within coordinates
Rr627710	regulatory region 627710	1542 bp proximal