rs29654022 SNP Detail

Summary

• ID
  rs29654022
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:42174802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGC ATTACTTCCC TAGAGTCACA
  M
  ATACAGATGG GGAATTCTGA GTTCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss46328967	mCV23263548	ABI	CRAMUS_MOUSE	f	SNP		C	C					A
ss52006408	NES15025805	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		C	C	C		A	C	A	A
ss136379330	ENSMUSSNP1371402	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss322933977	CHEV_9_42071589	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs29654022					SNP	C	C	C	C	C	C	C	A	C	C	C	C	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52006408	NES15025805	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:42174802 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21617	CpG island 21617	148 bp proximal
Gm10690	predicted gene 10690	852 bp upstream
Rr368719	regulatory region 368719	997 bp upstream
Rr401326	regulatory region 401326	687 bp upstream
Rr677189	regulatory region 677189	89 bp proximal
Rr677190	regulatory region 677190	684 bp proximal
Rr677191	regulatory region 677191	964 bp proximal
Sc5d	sterol-C5-desaturase	within coordinates
Tssr84545	transcription start site region 84545	965 bp upstream
Tssr89017	transcription start site region 89017	1365 bp upstream
Tssr89018	transcription start site region 89018	698 bp downstream
Tssr89019	transcription start site region 89019	720 bp downstream