rs29654294 SNP Detail

Summary

• ID
  rs29654294
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:58083050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTCATTT GGTGAATGTG
  TGTAGAACGT CTACTATGGG GAAAGAACTA TACTGAGCAC AGAGGATTCC CATGATAAAC
  AAGAATACGG ATAGACTGGA AAAGTTACCC CCTTCAGGGA GTCAAAAAGC TGCCTCACTC
  TGCTGTCTGG GAAGGAAGGC TGCTTTGAAA TAGCAGTGGA GAGTAAACAC AACACTCACT
  S
  TCTGTAGTCA GGGCCCACTA ACATCTTCTT ACTCCCATGC ATGTATTCTC TATCTGAAAG
  TCAGAGCTCT GCTCCAAGAA AGAATTAGAC AGCATCACTC TCCTACTTAA AACCACCGGG
  GTTTCCTATT TTGTTTCCAT TCTGCATTTA TCTTCAACAC ATTGATATTT TGCATATTTA
  ACGATGCCTC TCTCTCCCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47367887	NES11056121	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	C	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs29654294					SNP	G	G	G	G	C	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47367887	NES11056121	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58083050 () rs orientation: forward

Symbol	Name	Function Class
Aox1	aldehyde oxidase 1	within coordinates
Gm69841	predicted gene, 69841	1205 bp downstream
Tssr11773	transcription start site region 11773	1382 bp downstream