rs29654300 SNP Detail

Summary

• ID
  rs29654300
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:58083496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTTCCCA CGTTCAAGGG
  GAAGACTGGA ATCTGAGTGG GAGCTGGGGC TCTGCTATGC CTGCATTCCC CAAGAAACCT
  CTCCAGGCTT CACAGCCAGA CTGTCAGGTT TTTAGAATAC CGAAAGTTCC TTTTTGGTCT
  CCTCTGTTAC ATTCTAGGCG TCACAAAATC TTTGGCAGCC ATGTTGCCTT ATTCTTAGCC
  Y
  CTAACATGAT AACATTATAC TCAATGAAAG CCTAGCATTT TCTCTCAGTT CTGCCCTTTC
  TGATCTTTGT TACAGAACCT GCTCACCTGG GGAAATTCTT TCAGTCCCTT CCTCACCTCC
  ACTTTGAGCC ACTACCCCAA TCCCAAGCAC CCAGGGCACA TTCATAGGGA AAGAGTTCAG
  CTCTTTGTTT TAACCCTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47367893	NES11056125	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29654300					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47367893	NES11056125	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58083496 () rs orientation: forward

Symbol	Name	Function Class
Aox1	aldehyde oxidase 1	Intron
Gm69841	predicted gene, 69841	759 bp downstream
Tssr11773	transcription start site region 11773	936 bp downstream