rs29654302 SNP Detail

Summary

• ID
  rs29654302
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:58083583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCACAGCC AGACTGTCAG
  GTTTTTAGAA TACCGAAAGT TCCTTTTTGG TCTCCTCTGT TACATTCTAG GCGTCACAAA
  ATCTTTGGCA GCCATGTTGC CTTATTCTTA GCCCCTAACA TGATAACATT ATACTCAATG
  AAAGCCTAGC ATTTTCTCTC AGTTCTGCCC TTTCTGATCT TTGTTACAGA ACCTGCTCAC
  Y
  TGGGGAAATT CTTTCAGTCC CTTCCTCACC TCCACTTTGA GCCACTACCC CAATCCCAAG
  CACCCAGGGC ACATTCATAG GGAAAGAGTT CAGCTCTTTG TTTTAACCCT TTATACCCAT
  CCACATGTGA CCATTAATGG TCTGCTGACT AAACAGCCTG GTTTCTCCTT CCTTCCTCTG
  ATATTAGGTG AGCTCTTTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47367896	NES11056126	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29654302					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47367896	NES11056126	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58083583 () rs orientation: forward

Symbol	Name	Function Class
Aox1	aldehyde oxidase 1	within coordinates
Gm69841	predicted gene, 69841	672 bp downstream
Tssr11773	transcription start site region 11773	849 bp downstream